Program Studi Teknik Sipil UIN Sunan Ampel, Surabaya memiliki 7 laboratorium dengan berbagai alat-alat guna mendukung proses belajar mengajar

1. Structure Laboratory
2. Concrete and Material Laboratory
3. Hydrology-Hydraulics Laboratory
4. Soil Mechanics and Geohydrology Laboratory
5. Transportation Laboratory
6. Mapping and Risk Mitigation Laboratory
7. Studio and Design Laboratory